TMscore(1)

NAME

   TM-score - an algorithm to calculate the similarity of topologies of
   two protein structures

VERSION

   This documentation refers to TM-score version released on 2011/01/30

SYNOPSIS

   1. Run TM-score to compare 'model' and 'native':

       TMscore model native

   2. Run TM-score with an assigned d0, e.g. 5 Angstroms:

       TMscore model native -d 5

   3. Run TM-score with superposition output, e.g. 'TM.sup', and view in
   Rasmol:

       TMscore model native -o TM.sup
       rasmol -script TM.sup

DESCRIPTION

   This program is to compare two protein structures and identify the best
   superposition that has the highest TM-score. Input structures must be
   in the PDB format. By default, TM-score is normalized by the second
   protein. Users can obtain a brief instruction by simply running the
   program without arguments.

OPTIONS

       -o filename.sup Outputs the superposition to the specified file,
          suitable for use in rasmol.

       -d value Sets d0 to the specified number of angstroms.

SEE ALSO

   TMalign, rasmol

   When  using  this proram and for more detailed information, please
   refer to the publication in NucleicAcidsRes.  (2005) Volume 33 page
   2303ff. by Zhang and Skolnick.

AUTHOR

   For comments/suggestions,please contact email: [email protected].

   This manpage was compiled by Tim Booth ([email protected])

.                                 2011-02-03                        TMSCORE(1)

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